| void Impala::Application::Util::DoScoreConcepts | ( | ) |
Definition at line 940 of file mainUtil.cpp.
References Impala::Core::Table::AveragePrecision(), Impala::Core::Table::AveragePrecisionJudged(), Impala::Util::DatabaseReadStrings(), Impala::Core::Table::TableTem< Col1T, Col2T, Col3T, Col4T, Col5T, Col6T, Col7T, Col8T, Col9T >::Get1(), Impala::CmdOptions::GetArg(), Impala::Util::Database::GetFilePath(), Impala::CmdOptions::GetInstance(), Impala::CmdOptions::GetNrArg(), ILOG_ERROR, ILOG_VAR, Impala::Core::Table::SimilarityTableSet::MakeFromFile(), Impala::Core::Database::MakeRawDataSet(), Impala::MakeString(), and Impala::QuidClass().
Referenced by mainUtil().
00941 { 00942 #ifndef REPOSITORY_TODO 00943 typedef Core::Database::RawDataSet RawDataSet; 00944 typedef Core::Table::SimilarityTableSet SimilarityTableSet; 00945 typedef Core::Table::AnnotationTable AnnotationTable; 00946 using Impala::Core::Table::AveragePrecision; 00947 00948 ILOG_VAR(Impala.Application.Util.DoScoreConcept); 00949 CmdOptions& options = CmdOptions::GetInstance(); 00950 if (options.GetNrArg() < 4) 00951 { 00952 ILOG_ERROR("Need more parameters"); 00953 return; 00954 } 00955 String dataSetName = options.GetArg(1); 00956 String annoSet = options.GetArg(2); 00957 String namesPath = options.GetArg(3); 00958 String mappingName; 00959 if (options.GetNrArg() > 4) 00960 mappingName = options.GetArg(4); 00961 00962 RawDataSet* dataSet = Core::Database::MakeRawDataSet(dataSetName); 00963 Impala::Util::Database* db = dataSet->GetDatabase(); 00964 SimilarityTableSet* simSet = 00965 Core::Table::SimilarityTableSet::MakeFromFile( 00966 db->GetFilePath(".", namesPath, false, false), db); 00967 00968 Impala::Util::SimpleMap<String, String> conceptMapping; 00969 if (!mappingName.empty()) 00970 { 00971 std::vector<String> lines; 00972 Impala::Util::DatabaseReadStrings(lines, mappingName, db); 00973 for (int i=0 ; i<lines.size() ; i++) 00974 { 00975 Impala::Util::StringParser p(lines[i]); 00976 String src = p.GetString(' '); 00977 String dst = p.GetString(' ', false); 00978 std::cout << src << " => " << dst << std::endl; 00979 conceptMapping.Add(src, dst); 00980 } 00981 } 00982 00983 Core::Table::QuidTable* qTable = simSet->GetQuidTable(); 00984 int qClass = QuidClass(qTable->Get1(0)); 00985 Real64 map = 0; 00986 Real64 mapJ = 0; 00987 Real64 map2000 = 0; 00988 Real64 map2000J = 0; 00989 bool do2000 = (simSet->TableSize() > 2000); 00990 int nrMap = 0; 00991 std::cout << namesPath << ", size = " << simSet->TableSize() << std::endl; 00992 for (int c=0 ; c<simSet->NrTables() ; c++) 00993 { 00994 String concept = simSet->GetName(c); 00995 String mappedConcept; 00996 if (!mappingName.empty()) 00997 { 00998 if (conceptMapping.Get(concept, mappedConcept)) 00999 { 01000 concept = mappedConcept; 01001 } 01002 else 01003 { 01004 continue; 01005 } 01006 } 01007 String fName = dataSet->GetFilePathAnnotation(qClass, annoSet, 01008 concept + ".tab", 01009 false, false); 01010 if (fName.empty()) 01011 { 01012 ILOG_ERROR("No groundtruth for " << concept); 01013 continue; 01014 } 01015 AnnotationTable* truth = AnnotationTable::MakeFromFile(concept, fName, 01016 db); 01017 truth->UpdateQuidMap(); 01018 Real64 ap = AveragePrecision(simSet->GetRankTable(c), truth, -1); 01019 Real64 apJ = AveragePrecisionJudged(simSet->GetRankTable(c), truth, 01020 false, -1); 01021 map += ap; 01022 mapJ += apJ; 01023 std::cout << MakeString(concept, 30) 01024 << " " << ap << "\t j: " << apJ; 01025 01026 if (do2000) 01027 { 01028 Real64 ap2000 = AveragePrecision(simSet->GetRankTable(c), truth, 01029 2000); 01030 Real64 ap2000J = AveragePrecisionJudged(simSet->GetRankTable(c), 01031 truth, false, 2000); 01032 map2000 += ap2000; 01033 map2000J += ap2000J; 01034 std::cout << "\t " << ap2000 << "\t j: " << ap2000J; 01035 } 01036 01037 std::cout << std::endl; 01038 nrMap++; 01039 delete truth; 01040 } 01041 std::cout << "map=" << map/nrMap << ", mapJudged=" << mapJ/nrMap; 01042 if (do2000) 01043 std::cout << " map2000=" << map2000/nrMap << ", map2000Judged=" 01044 << map2000J/nrMap; 01045 std::cout << std::endl << std::endl; 01046 delete simSet; 01047 delete dataSet; 01048 #endif 01049 }
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